Molecular diversity of Chickpea chlorotic dwarf virus in Sudan: High rates of intra-species recombination – a driving force in the emergence of new strains
cg.contact | S.KUMARI@CGIAR.ORG | en_US |
cg.contributor.center | International Center for Agricultural Research in the Dry Areas - ICARDA | en_US |
cg.contributor.center | University of Florida - UF | en_US |
cg.contributor.center | Agricultural Research Corporation - ARC Sudan | en_US |
cg.contributor.center | University of the Western Cape, Institute for Poverty, Land and Agrarian Studies - UWC - PLAAS | en_US |
cg.contributor.center | The French National Center for Scientific Research - CNRS | en_US |
cg.contributor.center | University of Canterbury | en_US |
cg.contributor.center | Department of Agriculture and Fisheries - daf | en_US |
cg.contributor.center | University of Queensland - UQ | en_US |
cg.contributor.center | University of Cape Town, Institute of Infectious Diseases and Molecular Medicine - UCT - IDM | en_US |
cg.contributor.center | University of Cape Town - UCT | en_US |
cg.contributor.funder | University of Canterbury | en_US |
cg.contributor.funder | National Research Foundation | en_US |
cg.contributor.project | Communication and Documentation Information Services (CODIS) | en_US |
cg.contributor.project-lead-institute | International Center for Agricultural Research in the Dry Areas - ICARDA | en_US |
cg.coverage.country | SD | en_US |
cg.coverage.region | Northern Africa | en_US |
cg.creator.id | Kumari, Safaa: 0000-0002-4492-6257 | en_US |
cg.date.embargo-end-date | Timeless | en_US |
cg.identifier.doi | https://dx.doi.org/10.1016/j.meegid.2014.11.024 | en_US |
cg.isijournal | ISI Journal | en_US |
cg.issn | 1567-1348 | en_US |
cg.journal | Infection, Genetics and Evolution | en_US |
cg.subject.agrovoc | recombination | en_US |
cg.subject.agrovoc | sudan | en_US |
cg.subject.agrovoc | chickpeas | en_US |
cg.subject.agrovoc | chickpea | en_US |
cg.volume | 29 | en_US |
dc.contributor | Kumari, Safaa | en_US |
dc.contributor | Hamed, Abdelmagid Adlan | en_US |
dc.contributor | Gronenborn, Bruno | en_US |
dc.contributor | Thomas, John | en_US |
dc.contributor | Sharman, Murray | en_US |
dc.contributor | Harkins, Gordon | en_US |
dc.contributor | Muhire, Brejnev | en_US |
dc.contributor | Martin, Darren | en_US |
dc.contributor | Varsani, Arvind | en_US |
dc.creator | Kraberger, Simona | en_US |
dc.date.accessioned | 2022-03-31T22:30:11Z | |
dc.date.available | 2022-03-31T22:30:11Z | |
dc.description.abstract | In Sudan Chickpea chlorotic dwarf virus (CpCDV, genus Mastrevirus, family Geminiviridae) is an important pathogen of pulses that are grown both for local consumption, and for export. Although a few studies have characterised CpCDV genomes from countries in the Middle East, Africa and the Indian subcontinent, little is known about CpCDV diversity in any of the major chickpea production areas in these regions. Here we analyse the diversity of 146 CpCDV isolates characterised from pulses collected across the chickpea growing regions of Sudan. Although we find that seven of the twelve known CpCDV strains are present within the country, strain CpCDV-H alone accounted for similar to 73% of the infections analysed. Additionally we identified four new strains (CpCDV-M, -N, -O and -P) and show that recombination has played a significant role in the diversification of CpCDV, at least in this region. Accounting for observed recombination events, we use the large amounts of data generated here to compare patterns of natural selection within protein coding regions of CpCDV and other dicot-infecting mastrevirus species. (C) 2014 Elsevier B.V. All rights reserved. | en_US |
dc.identifier | https://mel.cgiar.org/dspace/limited | en_US |
dc.identifier.citation | Simona Kraberger, Safaa Kumari, Abdelmagid Adlan Hamed, Bruno Gronenborn, John Thomas, Murray Sharman, Gordon Harkins, Brejnev Muhire, Darren Martin, Arvind Varsani. (1/1/2015). Molecular diversity of Chickpea chlorotic dwarf virus in Sudan: High rates of intra-species recombination – a driving force in the emergence of new strains. Infection, Genetics and Evolution, 29, pp. 203-215. | en_US |
dc.identifier.status | Timeless limited access | en_US |
dc.identifier.uri | https://hdl.handle.net/20.500.11766/67307 | |
dc.language | en | en_US |
dc.publisher | Elsevier (12 months) | en_US |
dc.source | Infection, Genetics and Evolution;29,(2014) Pagination 203-215 | en_US |
dc.subject | geminivirus | en_US |
dc.subject | chickpea chlorotic dwarf virus | en_US |
dc.subject | mastrevirus | en_US |
dc.title | Molecular diversity of Chickpea chlorotic dwarf virus in Sudan: High rates of intra-species recombination – a driving force in the emergence of new strains | en_US |
dc.type | Journal Article | en_US |
dcterms.available | 2014-11-29 | en_US |
dcterms.extent | 203-215 | en_US |
dcterms.issued | 2015-01-01 | en_US |
mel.impact-factor | 3.342 | en_US |